The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2240
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 220298
End posion on genome 220200
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position
ccggaagctg
tRNA gene sequence
GCCGCCGTAGCTCAGCTGGTTAGAGCGCGGGACTGTGGATCCCGAGGTCCCGGGTTCAAA
TCCCGGCGGCGGCCCCA
Downstream region at tRNA end position
ccaaagcctc
Secondary structure (Cloverleaf model)
>At2240	His	GTG
                   g      CCCA ccaaagcctc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCTGGTTAGAGCGCGGGACTGTGGaggcccggctgaggccgcggag
ATCCCGAGGTCCCGGGTTCAAATCCCGGCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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