The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2241
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 169708
End posion on genome 169564
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tcggcggcag
tRNA gene sequence 
CCCGCCGTAGCTCAGCGGAAGAGCGCCCGGCTGTAGACCGGGTGGTCCGGGGTTCGAATC
CCCGCGGCGGGACCA
Downstream region at tRNA end position 
aaaccccggc
Secondary structure (Cloverleaf model)
>At2241	Tyr	GTA
                   g      ACCA aaaccccggc
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      C     C T C G       C G G G G     C
      G     | | | |                 T T
      G     G A G C
        A A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCGTAGCTCAGCGGAAGAGCGCCCGGCTGTAGggccctccaggcccgcccccggac
ccgaagggcccttaggcccgcgggatgagggggcgccggcccagacACCGGGTGGTCCGG
GGTTCGAATCCCCGCGGCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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