The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2244
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 2096
End posion on genome 2006
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
cagccggcgg
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGCAGAGCGCCGGCCTCGTAAGCCGGTGGTCGCGGGTTCAAA
TCCCGCCGGCGGCTCCA
Downstream region at tRNA end position 
catcttaatc
Secondary structure (Cloverleaf model)
>At2244	Thr	CGT
                   g      TCCA catcttaatc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    C       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGCAGAGCGCCGGCCTCGTAcggccctccgagagAGCCGGTG
GTCGCGGGTTCAAATCCCGCCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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