The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2283
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 741217
End posion on genome 741139
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
atagggaaag
tRNA gene sequence 
GGGCCTGTGAGGTAGTCAGGATATCCCATCGGCCCTCGGAGCCGACAACCCGGGTTCAAA
TCCCGGCAGGCCCGatc
Downstream region at tRNA end position 
cgaatccaat
Secondary structure (Cloverleaf model)
>At2283	Arg	TCG
                   g      Gatc cgaatccaat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  A         T G G A       C C G G G     C
  G           | |                   T T
  G         T C C C
    A T A          A     CAAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  C       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTGTGAGGTAGTCAGGATATCCCATCGGCCCTCGGAGCCGACAACCCGGGTTCAAA
TCCCGGCAGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK