The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2285
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 938599
End posion on genome 938688
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
cttggcttgt
tRNA gene sequence 
GGCACGGGGTGCTTATCTTGGTAGATGAGGGCGGACTTCAGATCCGTCGAGTTCCGTTGG
AATTCGGGGTTCGATTCCCCCCCTGCGCCGttt
Downstream region at tRNA end position 
tatatttttg
Secondary structure (Cloverleaf model)
>At2285	SeC	TCA
                   t      Gttt tatatttttg
                     G - C
                     G - C
                     C - G
                     A   C
                     C - G
                     G + T
                     G - C
                     G - C          T T
                    G     C C C C C     A
    T C T A        T        | | | |     G
  T         T T C G       C G G G G     C
  G           +                     T T
  G         T G A G
    T A G A        G     CGAGTTCCGTTGGAATT
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCACGGGGTGCTTATCTTGGTAGATGAGGGCGGACTTCAGATCCGTCGAGTTCCGTTGG
AATTCGGGGTTCGATTCCCCCCCTGCGCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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