The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2288
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1021153
End posion on genome 1021242
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
attacttcgt
tRNA gene sequence 
GGCACGGGGTGCTTATCTTGGTAGATGAGGGCGGACTTCAGATCCGTCGAGTTCCGTCGG
AATTCGGGGTTCGATTCCCCCCCTGCGCCGttt
Downstream region at tRNA end position 
tttatgattt
Secondary structure (Cloverleaf model)
>At2288	SeC	TCA
                   t      Gttt tttatgattt
                     G - C
                     G - C
                     C - G
                     A   C
                     C - G
                     G + T
                     G - C
                     G - C          T T
                    G     C C C C C     A
    T C T A        T        | | | |     G
  T         T T C G       C G G G G     C
  G           +                     T T
  G         T G A G
    T A G A        G     CGAGTTCCGTCGGAATT
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCACGGGGTGCTTATCTTGGTAGATGAGGGCGGACTTCAGATCCGTCGAGTTCCGTCGG
AATTCGGGGTTCGATTCCCCCCCTGCGCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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