The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2290
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 188240
End posion on genome 188326
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gtaccgaaag
tRNA gene sequence 
GCCGCCGCCACCGGGGTGGTCCCCGGGCCGGACTTCAGATCCGGCGCGCCCCGAGTGGGG
CGCGGGGTTCAATTCCCCGCGGCGGCCgcg
Downstream region at tRNA end position 
gtcgttcgtt
Secondary structure (Cloverleaf model)
>At2290	SeC	TCA
                   g      Cgcg gtcgttcgtt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G          T A
                    C     C C C C T     A
      T G G        A      |   | | +     C
    G       G G C C       G C G G G     T
    G       | | | |                 G T
    T       C C G G
      C C          G     CGCGCCCCGAGTGGGGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGCCACCGGGGTGGTCCCCGGGCCGGACTTCAGATCCGGCGCGCCCCGAGTGGGG
CGCGGGGTTCAATTCCCCGCGGCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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