The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2292
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1002908
End posion on genome 1003083
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gaaaactggc
tRNA gene sequence 
GGGGTCGTGGCCTAGTCCGGAATGGCGACGGGCTCCAGACCCGTCGATCGTGAGTTCAAA
TCTCACCGACCCCAcgt
Downstream region at tRNA end position 
ttttcgaaac
Secondary structure (Cloverleaf model)
>At2292	Trp	CCA
                   c      Acgt ttttcgaaac
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C A C T C     A
      T G A        G      | | | | |     A
    C       T C C G       G T G A G     C
    C         | | |                 T T
    G       T G G C
      G A A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTGGCCTAGTCCGGAATGGCGACGGGCTCCAGcggtcttagcgtatgatgaact
atcgggtctactgatttgatgatgacccgctggagcactgatctaatcactgctcttgaa
catgttcgcttgtcggagagACCCGTCGATCGTGAGTTCAAATCTCACCGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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