The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2294
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1729280
End posion on genome 1729209
Amino Acid Pyl
Anticodon CTA
Upstream region at tRNA start position 
ttatcaagga
tRNA gene sequence 
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG
GGGTTTCCGCCAc
Downstream region at tRNA end position 
gtttctgaat
Secondary structure (Cloverleaf model)
>At2294	Pyl	CTA
                   a      CCAc gtttctgaat
                     G   G
                     G - C
                     A   C
                     A - T
                     A - T
                     C   T
                     C - G          C T
                    T     G G G C C     T
        G T        G      |     |       A
      T     A C T A       C G G G T     G
      A       | |                   T A
      G     C G A A
        A T        T     AGC
                    G - C
                    G + T
                    A - T
                    C - G
                    T   C
                  C       C
                  T       T
                    A A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG
GGGTTTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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