The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2295
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1015199
End posion on genome 1015128
Amino Acid Pyl
Anticodon CTA
Upstream region at tRNA start position 
ttgcctagga
tRNA gene sequence 
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG
GGGTTTCCGCCAt
Downstream region at tRNA end position 
atttctgaat
Secondary structure (Cloverleaf model)
>At2295	Pyl	CTA
                   a      CCAt atttctgaat
                     G   G
                     G - C
                     A   C
                     A - T
                     A - T
                     C   T
                     C - G          C T
                    T     G G G C C     T
        G T        G      |     |       A
      T     A C T A       C G G G T     G
      A       | |                   T A
      G     C G A A
        A T        T     AGC
                    G - C
                    G + T
                    A - T
                    C - G
                    T   C
                  C       C
                  T       T
                    A A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG
GGGTTTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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