The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2296
Genome IDAE010299
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina acetivorans C2A [AE010299]
Start position on genome 187923
End posion on genome 187852
Amino Acid Pyl
Anticodon CTA
Upstream region at tRNA start position
ttgttgagga
tRNA gene sequence
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG
GGGTTTCCGCCAt
Downstream region at tRNA end position
gtttctgaat
Secondary structure (Cloverleaf model)
>At2296	Pyl	CTA
                   a      CCAt gtttctgaat
                     G   G
                     G - C
                     A   C
                     A - T
                     A - T
                     C   T
                     C - G          C T
                    T     G G G C C     T
        G T        G      |     |       A
      T     A C T A       C G G G T     G
      A       | |                   T A
      G     C G A A
        A T        T     AGC
                    G - C
                    G + T
                    A - T
                    C - G
                    T   C
                  C       C
                  T       T
                    A A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG
GGGTTTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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