The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At2296 |
Genome ID | AE010299 |
Phylum/Class | Euryarchaeota |
Species | Methanosarcina acetivorans C2A [AE010299] |
Start position on genome
|
187923
|
End posion on genome
|
187852
|
Amino Acid
|
Pyl
|
Anticodon
|
CTA
|
Upstream region at tRNA start position
|
ttgttgagga
|
tRNA gene sequence
|
GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG GGGTTTCCGCCAt
|
Downstream region at tRNA end position
|
gtttctgaat
|
Secondary structure (Cloverleaf model) | >At2296 Pyl CTA
a CCAt gtttctgaat
G G
G - C
A C
A - T
A - T
C T
C - G C T
T G G G C C T
G T G | | A
T A C T A C G G G T G
A | | T A
G C G A A
A T T AGC
G - C
G + T
A - T
C - G
T C
C C
T T
A A A
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGAAACCTGATCATGTAGATCGAATGGACTCTAAATCCGTTCAGCCGGGTTAGATTCCCG GGGTTTCCGCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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