The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2297
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2190747
End posion on genome 2190676
Amino Acid Pyl
Anticodon CTA
Upstream region at tRNA start position
ataactacat
tRNA gene sequence
GGAGACTTGATCATGTAGATCGAACGGACTCTAAATCCTTTCAGCCGGGTTAGATTCCCG
GAGTTTCCGCCAaat
Downstream region at tRNA end position
ggacatggct
Secondary structure (Cloverleaf model)
>At2297	Pyl	CTA
                   t      Aaat ggacatggct
                     G - C
                     G - C
                     A   G
                     G - C
                     A   C
                     C   T
                     T   T          C C
                    T     T G A G G     C
        G T        G      +   | +       T
      T     A C T A       G G T T A     T
      A       | |                   G A
      G     C G A A
        A T        C     AGCCG
                    G - C
                    G + T
                    A - T
                    C   T
                    T   C
                  C       C
                  T       T
                    A A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAGACTTGATCATGTAGATCGAACGGACTCTAAATCCTTTCAGCCGGGTTAGATTCCCG
GAGTTTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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