The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2298
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 348293
End posion on genome 348174
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
cccgtgtcgg
tRNA gene sequence 
GGAGGAGTAATCAAGCCTGGCCAAAGATGCAGGACTTAAGATCCTGTCTCCTAGGGGTTC
GTGGGTTCAAATCCCACCTCCTCCActa
Downstream region at tRNA end position 
gccccgtttg
Secondary structure (Cloverleaf model)
>At2298	Leu	TAA
                   g      Acta gccccgtttg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     A
  T         A C T A       G T G G G     C
  G           | | |                 T T
  G         A G A T
    C C A A        G     TCTCCTAGGGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAGGAGTAATCAAGCCTGGCCAAAGcaagcgcaagcttttggagATGCAGGACTTAAGa
tcaaaaaaataggggATCCTGTCTCCTAGGGGTTCGTGGGTTCAAATCCCACCTCCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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