The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2299
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 716324
End posion on genome 716233
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
taatggaaga
tRNA gene sequence 
CCCGCCGTAGCTCAGCCCGGTTCTAGAGCGCCCGGCTGTAGACCGGGTGGTCCGGGGTTC
AAGTCCCCGCGGCGGGAttc
Downstream region at tRNA end position 
ctattacatg
Secondary structure (Cloverleaf model)
>At2299	Tyr	GTA
                   a      Attc ctattacatg
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       C G G G G     C
  G           | |                   T T
  G         T A G A
    T T C          G     GGTGGTC
                    C - G
                    G - C
                    C   C
                    C   A
                    C - G *
                  G       A
                  G       T
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCGTAGCTCAGCCCGGTTCTAGAGCGCCCGGCTGTAGgttaggagggcagttACCG
GGTGGTCCGGGGTTCAAGTCCCCGCGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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