The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2300
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 858840
End posion on genome 858758
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ctgttatcat
tRNA gene sequence 
GCCGAGATAGTCTAGTCTGGTAAGGCGCAGGACTTGAAATCCTGTGGAGTTTCTCCGCCT
GGGTTCAAATCCCAGTCTCGGCGtta
Downstream region at tRNA end position 
tcttttttac
Secondary structure (Cloverleaf model)
>At2300	Ser	TGA
                   t      Gtta tcttttttac
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G A C C C     A
      T G A        A      | | | | |     A
    C       T C T G       C T G G G     C
    T       | | + |                 T T
    G       A G G C
      G T A        G     TGGAGTTTCTCCGC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGATAGTCTAGTCTGGTAAGGCGCAGGACTTGAAATCCTGTGGAGTTTCTCCGCCT
GGGTTCAAATCCCAGTCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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