The detailed information of tRNA gene sequence


Sequence ID>WENV170683862
Genome IDLFRM01008395
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 646
End posion on genome 555
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aaaaattcac
tRNA gene sequence 
GGAGAAGTACTCAAGTTGGCTGAAGAGGCGCCCCTGCTAAGGGCGTAGGTCGTGTAAGCG
GCGCGAGGGTTCAAATCCCTCCTTCTCCGCCA
Downstream region at tRNA end position 
tttttttatc
Secondary structure (Cloverleaf model)
>WENV170683862	Ser	GCT
                   c      GCCA tttttttatc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C T C C C     A
    T T G A        A      | | | | |     A
  G         A C T C       G A G G G     C
  G           | | |                 T T
  C         A G A G
    T G A          G     TAGGTCGTGTAAGCGGCGC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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