The detailed information of tRNA gene sequence


Sequence ID>WENV170685254
Genome IDLFRM01080657
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 1778
End posion on genome 1702
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
nnnnnagtgc
tRNA gene sequence 
GGAGCGGTAGTTCAGTTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAG
TCCCGTCCGCTCCGCCA
Downstream region at tRNA end position 
tttttgaccc
Secondary structure (Cloverleaf model)
>WENV170685254	Asp	GTC
                   c      GCCA tttttgaccc
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     T G C C C     A
      T G A        A      + | | | |     G
    T       C T T G       G C G G G     C
    G       | | | +                 T T
    G       G A A T
      T T A        G     AGGTC
                    C - G
                    T + G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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