The detailed information of tRNA gene sequence


Sequence ID>WENV170685705
Genome IDLFRM01105041
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 10259
End posion on genome 10353
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gctaagacgt
tRNA gene sequence 
GGAGAGATGGCCGAGTAGGTCGAAGGCGGTCGCCTGCTAAGCGATTATACGGACGAAAAT
CCGTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
tttatatgcg
Secondary structure (Cloverleaf model)
>WENV170685705	Ser	GCT
                   t      GCCA tttatatgcg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
    A T G A        G      | | | | |     G
  G         G C C G       G A G G G     C
  G           | | |                 T T
  T         A G G C
    C G A          G     TATACGGACGAAAATCCGTATC
                    G + T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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