The detailed information of tRNA gene sequence


Sequence ID>WENV170686003
Genome IDLFRM01121424
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 2546
End posion on genome 2622
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttttatatat
tRNA gene sequence 
CGCGGAATAGAGCAGCTAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCACAGGTTCAAA
TCCTGTTTCCGCAACCA
Downstream region at tRNA end position 
attttgtgtc
Secondary structure (Cloverleaf model)
>WENV170686003	Met	CAT
                   t      ACCA attttgtgtc
                     C   A
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     A - T          T A
                    T     T G T C C     A
      C G A        A      | | | | |     A
    T       C G A G       A C A G G     C
    A       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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