The detailed information of tRNA gene sequence


Sequence ID>WENV170687353
Genome IDLFRM01190158
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 4845
End posion on genome 4920
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
aaataaaaat
tRNA gene sequence 
GGTCCAGTAGTGTAGCGGTTAACATGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATT
CCCGTCTGGACCGCCA
Downstream region at tRNA end position 
ttttaaaaaa
Secondary structure (Cloverleaf model)
>WENV170687353	Asp	GTC
                   t      GCCA ttttaaaaaa
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          T T
                    T     T G C C C     A
      C G A        A      + | | | |     G
    G       T G T G       G C G G G     C
    G       | | | +                 T T
    T       A C A T
      T A          G     AGATC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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