The detailed information of tRNA gene sequence


Sequence ID>WENV170687872
Genome IDLFRM01214605
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 105168
End posion on genome 105252
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
taaaacaaat
tRNA gene sequence 
GCCCAGGTAGTCTAGTGGTAAGGCGACGGTCTCGAAAACCGTTTCTCCCTCGGGAGAGCG
CAGGTTCGAATCTTGCCCTGGGCGCtt
Downstream region at tRNA end position 
attttctaaa
Secondary structure (Cloverleaf model)
>WENV170687872	Ser	CGA
                   t      GCtt attttctaaa
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C          T A
                    T     C G T T C     A
        G A        A      | | | + |     G
      T     T C T G       G C A G G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TTCTCCCTCGGGAGAGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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