The detailed information of tRNA gene sequence


Sequence ID>WENV170688678
Genome IDLFRM01257142
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 3516
End posion on genome 3440
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ccattgacag
tRNA gene sequence 
CGCGGGGTGGAGCAGTCAGGTAGCTCGTCGGGCTCATAACCCGGAGGTCGCAGGTTCAAA
TCCTGCCCCCGCAACCA
Downstream region at tRNA end position 
atcataagga
Secondary structure (Cloverleaf model)
>WENV170688678	Met	CAT
                   g      ACCA atcataagga
                     C   A
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G T C C     A
      T G A        G      | | | | |     A
    C       C G A G       G C A G G     C
    A       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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