The detailed information of tRNA gene sequence


Sequence ID>WENV170689642
Genome IDLFRM01305096
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 14853
End posion on genome 14927
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
ttcaattcat
tRNA gene sequence 
GGGCTCGTGGTCTAGATGGTTATGACGTCGCCTTCACACGGCGGAGGTCCTGAGTTCGAA
TCTCAGCGGGCCCACtc
Downstream region at tRNA end position 
tgatttttat
Secondary structure (Cloverleaf model)
>WENV170689642	Val	CAC
                   t      ACtc tgatttttat
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G A C T C     A
      A G A        G      | | | | |     G
    T       T C T G       C T G A G     C
    G         | | |                 T T
    G       T G A C
      T T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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