The detailed information of tRNA gene sequence


Sequence ID>WENV170689711
Genome IDLFRM01308036
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 152
End posion on genome 62
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cacgttcagc
tRNA gene sequence 
GGAGAGGTGGATGAGTGGTTGAAGTCGCACGCCTGGAAAGCGTGTATAGGTTAATAACCT
ATCGGGGGTTCGAATCCCCCTCTCTCCGCCA
Downstream region at tRNA end position 
aaaaacagtc
Secondary structure (Cloverleaf model)
>WENV170689711	Ser	GGA
                   c      GCCA aaaaacagtc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C C C C C     A
      T G A        G      | | | | |     G
    G       G T A G       G G G G G     C
    G         + | |                 T T
    T       A G T C
      T G A        G     TATAGGTTAATAACCTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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