The detailed information of tRNA gene sequence


Sequence ID>WENV170690420
Genome IDLFRM01340838
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 515
End posion on genome 426
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
taaatcgttc
tRNA gene sequence 
GGTGAAGTGGGTGAGTGGCTGAAACCAGTTCCCTGCTAAGGAACCATACGTGTAAGCGTA
TCGAGGGTTCGAATCCCTCCTTCACCGCCA
Downstream region at tRNA end position 
tttattcagt
Secondary structure (Cloverleaf model)
>WENV170690420	Ser	GCT
                   c      GCCA tttattcagt
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G T G G       G A G G G     C
    G         | | |                 T T
    C       A A C C
      T G A        A     CATACGTGTAAGCGTATC
                    G - C
                    T - A
                    T - A
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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