The detailed information of tRNA gene sequence


Sequence ID>WENV170690790
Genome IDLFRM01361603
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 1028
End posion on genome 952
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GCAGTGGTAGTTCAGTTGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAG
TCCCGTCCACTGCGCCA
Downstream region at tRNA end position 
tattacgaaa
Secondary structure (Cloverleaf model)
>WENV170690790	Asp	GTC
                   c      GCCA tattacgaaa
                     G - C
                     C - G
                     A - T
                     G - C
                     T - A
                     G - C
                     G - C          T G
                    T     T G C C C     A
      T G A        A      + | | | |     G
    T       C T T G       G C G G G     C
    G       | | | +                 T T
    G       G A A T
      T T A        A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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