The detailed information of tRNA gene sequence


Sequence ID>WENV170727160
Genome IDLSQX01406549
Search identical group
Phylum/Class[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
Species
Start position on genome 5770
End posion on genome 5696
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
aagtaaataa
tRNA gene sequence 
GGCCCTGTGGCGCAGTTGGTTAGCGCGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG
CCCCGTCAGGGTCGCag
Downstream region at tRNA end position 
agactgctct
Secondary structure (Cloverleaf model)
>WENV170727160	Asp	GTC
                   a      GCag agactgctct
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C          C G
                    T     T G C C C     A
      T G A        G      + | | | |     G
    T       C G C G       G C G G G     C
    G       | | | |                 T T
    G       G C G C
      T T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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