The detailed information of tRNA gene sequence


Sequence ID>WENV170763363
Genome IDLWDU01007857
Search identical group
Phylum/Class[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
Species
Start position on genome 1083
End posion on genome 1179
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
ctatcaatgc
tRNA gene sequence 
GGGAGTGGATAGTGTCCGGTGGCGCTCGCGGTCTTCAAAACCGTTGTGAGGCAACGTCGT
TGTCTTAGGTGGGTTCGACCCCCACGCATTCCCGCCA
Downstream region at tRNA end position 
ctttgctttt
Secondary structure (Cloverleaf model)
>WENV170763363	SeC(p)	TCA
                   c      GCCA ctttgctttt
                     G - C
                     G - C
                     G - C
                     A - T
                     G + T
                     T - A
                     G - C
                     G   G          C C
                    A     C A C C C     A
      C C T        T      | | | | |     G
    G       G T G A       G T G G G     C
    G       | + | |                 T T
    T       C G C T
      G G          C     TGTGAGGCAACGTCGTTGTCTTAG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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