The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0005
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 428497
End posion on genome 428611
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgggaggcct
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGTAGAGCGCCCGGCTCATAACCGGGTGGTCGGGGGTTCAAA
TCCCCCCGGGCCCACCA
Downstream region at tRNA end position 
catcctagcc
Secondary structure (Cloverleaf model)
>At0005	Met	CAT
                   t      ACCA catcctagcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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