The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0187
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2158561
End posion on genome 2158488
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agggtgaagt
tRNA gene sequence 
GGGCCCGTAGCTCAGCTAGGTAGAGCGCGCGGCTCATAACCGCGTGGTCGAGGGTTCAAA
TCCCTCCGGGCCCAcga
Downstream region at tRNA end position 
aatagcaaaa
Secondary structure (Cloverleaf model)
>At0187	Met	CAT
                   t      Acga aatagcaaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | | | | |     A
    T       C T C G       G A G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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