The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0192
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 663679
End posion on genome 663772
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctaataacca
tRNA gene sequence 
GGGCCCGTAGCTTAGCCAGGTAGAGCGCCCGGCTCATAACCGGGCGGTCCCGGGTTCAAA
TCCCGGCGGGCCCActt
Downstream region at tRNA end position 
ttttcgtgaa
Secondary structure (Cloverleaf model)
>At0192	Met	CAT
                   a      Actt ttttcgtgaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T T C G       C C G G G     C
    A       + | | |                 T T
    G       G A G C
      G T A        G     CGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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