The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0237
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 217834
End posion on genome 217934
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctagacacaa
tRNA gene sequence 
GGGCCCGTAGCTTAGCTAGGTAGAGCGCCCGGCTCATAACCGGGAGGTCCCGGGTTCAAA
TCCCGGCGGGCCCActg
Downstream region at tRNA end position 
gctctatatg
Secondary structure (Cloverleaf model)
>At0237	Met	CAT
                   a      Actg gctctatatg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       T T C G       C C G G G     C
    A       + | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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