The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0412
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 909644
End posion on genome 909571
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
tgggcaccgg
tRNA gene sequence
GGGCCCGTAGCTCAGCCAGGTAGAGCGCCGGGCTCATAACCCGGTGGTCGGGGGTTCGAA
TCCCCCCGGGCCCAcat
Downstream region at tRNA end position
acttttattt
Secondary structure (Cloverleaf model)
>At0412	Met	CAT
                   g      Acat acttttattt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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