The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0480
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 640497
End posion on genome 640570
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
ttgtatatgt
tRNA gene sequence
GGGCCCGTAGCTTAGCTCGGTAGAGCGCTCGGCTCATAACCGAGTGGTCAGGGGTTCAAA
TCCCCTCGGGCCCAtga
Downstream region at tRNA end position
aatttttact
Secondary structure (Cloverleaf model)
>At0480	Met	CAT
                   t      Atga aatttttact
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T C C C C     A
      C G A        A      | | | | |     A
    T       T T C G       A G G G G     C
    C       + | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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