The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0519
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 361020
End posion on genome 361112
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tttgtttatt
tRNA gene sequence 
GGGCCCGTAGCTTAGCCCGGTAGAGCGCCCGGCTCATAACCGGGTGGTCCGGGGTTCAAG
TCCCCGCGGGCCCAtct
Downstream region at tRNA end position 
ttattcctta
Secondary structure (Cloverleaf model)
>At0519	Met	CAT
                   t      Atct ttattcctta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T T C G       C G G G G     C
    C       + | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
Comment


---


Input Comment 




E-mail


Comment


 Input this 5 letters





Attention:
When your comment is judged as an irrelevant one by the administrator, 
your comment will be deleted by the administrator. 







 BACK