The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0653
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 473584
End posion on genome 473658
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cggcgcttat
tRNA gene sequence 
GGGCCTGTAGCTCAGTCCGGTTAGAGCGCCCGGCTCATAACCGGGCGGTCATGCGTTCGA
ATCGCATCAGGCCCAttg
Downstream region at tRNA end position 
cccattttta
Secondary structure (Cloverleaf model)
>At0653	Met	CAT
                   t      Attg cccattttta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     T A C G C     A
    C T G A        A      | | | | |     G
  C         C T C G       A T G C G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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