The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0847
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 542881
End posion on genome 542955
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttgcatatga
tRNA gene sequence 
GGGCCCTTAGCTCAGCCTGGTGAGAGCGCTCGGCTCATAACCGAGTGGTCGTTGGTTCGA
ATCCGACAGGGCCCAttc
Downstream region at tRNA end position 
ttattttcgc
Secondary structure (Cloverleaf model)
>At0847	Met	CAT
                   a      Attc ttattttcgc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     C A G C C     A
    C C G A        A      | | + | |     G
  T         C T C G       G T T G G     C
  G         | | | |                 T T
  G         G A G C
    T G A          G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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