The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0915
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1051168
End posion on genome 1051095
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tggcgctttt
tRNA gene sequence 
GGGCCCATAGCTTAGCCAGGTAGAGCGTCCGGCTCATAACCGGAAGGCCATGGGTTCGAA
CCCCATTGGGCCCAttt
Downstream region at tRNA end position 
caattaaatt
Secondary structure (Cloverleaf model)
>At0915	Met	CAT
                   t      Attt caattaaatt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          C A
                    T     T A C C C     A
      C G A        A      | | | | |     G
    C       T T C G       A T G G G     C
    A       + | | |                 T T
    G       G A G C
      G T A        G     AGGCC
                    T - A
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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