The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0984
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2531012
End posion on genome 2531086
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttttttttga
tRNA gene sequence 
GGGCCTATAGCTTAGTCAGGTTAGAGCGCCCGGCTCATAACCGGGCGATCACCGGTTCAA
ATCCGGTTAGGCCCAttc
Downstream region at tRNA end position 
aacttattca
Secondary structure (Cloverleaf model)
>At0984	Met	CAT
                   a      Attc aacttattca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     A - T          T A
                    T     T G G C C     A
    C T G A        A      | | | | |     A
  A         T T C G       A C C G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     CGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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