The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1210
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1297997
End posion on genome 1298068
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttctctctgc
tRNA gene sequence 
GGGCCTGTAGCTTAGTGGTGGAGCGCCCGGCTCATAACCGGGTGGTCGTGGGTTCGAACC
CCTCCGGGCCCAttc
Downstream region at tRNA end position 
tcattgcatt
Secondary structure (Cloverleaf model)
>At1210	Met	CAT
                   c      Attc tcattgcatt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C          C A
                    T     C T C C C     A
        G A        A      |   | | |     G
      T     T T C G       G T G G G     C
      G     + | | |                 T T
      G     G A G C
        T G        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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