The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1360
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 617852
End posion on genome 617778
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gtggtcttgc
tRNA gene sequence 
GGGCCTGTAGCTTAGTCCGGTTAGAGCGCTCGGCTCATAACCGAGTGGTCGCCGGTTCAA
ATCCGGCCAGGCCCAtgt
Downstream region at tRNA end position 
ccactccata
Secondary structure (Cloverleaf model)
>At1360	Met	CAT
                   c      Atgt ccactccata
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     C G G C C     A
    C T G A        A      | | | | |     A
  C         T T C G       G C C G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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