The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1558 |
Genome ID | CP000102 |
Phylum/Class | Euryarchaeota |
Species | Methanosphaera stadtmanae DSM 3091 [CP000102] |
Start position on genome
|
337051
|
End posion on genome
|
337124
|
Amino Acid
|
Met
|
Anticodon
|
CAT
|
Upstream region at tRNA start position
|
taattctttt
|
tRNA gene sequence
|
GGGCCCATAGCTTAGCCAGGTAGAGCGCCCGGCTCATAACCGGGCGGCCATGGGTTCGAA CCCCATTGGGCCCAttt
|
Downstream region at tRNA end position
|
tacaattata
|
Secondary structure (Cloverleaf model) | >At1558 Met CAT
t Attt tacaattata
G - C
G - C
G - C
C - G
C - G
C - G
A - T C A
T T A C C C A
C G A A | | | | | G
C T T C G A T G G G C
A + | | | T T
G G A G C
G T A G CGGCC
C - G
C - G
C - G
G - C
G - C
C A
T A
C A T
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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