The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1616
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2596393
End posion on genome 2596465
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctcatttttt
tRNA gene sequence 
GGGCCTGTAGCTTAGCGGTGAGAGCGCCCGGCTCATAACCGGGCGGTCATGCGTTCGAAT
CGCATCAGGCCCAtga
Downstream region at tRNA end position 
cctgtatttt
Secondary structure (Cloverleaf model)
>At1616	Met	CAT
                   t      Atga cctgtatttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     T A C G C     A
      C G A        A      | | | | |     G
    G       T T C G       A T G C G     C
    G       + | | |                 T T
    T       G A G C
      G A          G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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