The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1680
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1160419
End posion on genome 1160347
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gcggcgtcat
tRNA gene sequence 
GGGCCCATAGCTTAGCCAGGTAGAGGCCCGGCTCATAACCGGGCGGCCATGGGTTCGAAT
CCCATTGGGCCCActt
Downstream region at tRNA end position 
aatcggtaat
Secondary structure (Cloverleaf model)
>At1680	Met	CAT
                   t      Actt aatcggtaat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T A C C C     A
    C C G A        A      | | | | |     G
  A         T T C G       A T G G G     C
  G         | + | |                 T T
  G         A G G C
    T A G          C     GCC
                    C - G
                    G - C
                    G   G
                    C - G
                    T + G
                  C       C
                  A       C
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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