The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1764
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 780891
End posion on genome 780818
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
taggtgcaaa
tRNA gene sequence 
GGGGTTGTAGCTCAGCTAGGTAGAGCGCCTGGCTCATAACCAGGTGGTCGTCGGTTCAAA
CCCGGCCAGCCCCAtta
Downstream region at tRNA end position 
agtatttgtg
Secondary structure (Cloverleaf model)
>At1764	Met	CAT
                   a      Atta agtatttgtg
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     T - A
                     G - C          C A
                    T     C G G C C     A
      C G A        A      | + | | |     A
    T       C T C G       G T C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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