The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1855 |
Genome ID | AE009950 |
Phylum/Class | Euryarchaeota |
Species | Pyrococcus furiosus DSM 3638 [AE009950] |
Start position on genome
|
1287370
|
End posion on genome
|
1287293
|
Amino Acid
|
Met
|
Anticodon
|
CAT
|
Upstream region at tRNA start position
|
gccagtaagt
|
tRNA gene sequence
|
GGGCCCGTAGCTCAGCCTGGTCAGAGCGCGCGGCTCATAACCGCGTGGTCCGGGGTTCAA ATCCCCGCGGGCCCACCA
|
Downstream region at tRNA end position
|
tcattctctt
|
Secondary structure (Cloverleaf model) | >At1855 Met CAT
t ACCA tcattctctt
G - C
G - C
G - C
C - G
C - G
C - G
G - C T A
T G C C C C A
C C G A A | | | | | A
T C T C G C G G G G C
G | | | | T T
G G A G C
T C A G TGGTC
C - G
G - C
C - G
G - C
G - C
C A
T A
C A T
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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