The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1971
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 826120
End posion on genome 826193
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tcagcggcgt
tRNA gene sequence 
GGGGATGTAGCTCAGCTAGGCAGAGCGCCTGGCTCATAACCAGGTGGTCGTCGGTTCAAA
CCCGGCCATCCCCAtca
Downstream region at tRNA end position 
tccattctag
Secondary structure (Cloverleaf model)
>At1971	Met	CAT
                   t      Atca tccattctag
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          C A
                    T     C G G C C     A
      C G A        A      | + | | |     A
    T       C T C G       G T C G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
Comment


---


Input Comment 




E-mail


Comment


 Input this 5 letters





Attention:
When your comment is judged as an irrelevant one by the administrator, 
your comment will be deleted by the administrator. 







 BACK