The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2041
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 841178
End posion on genome 841105
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tcagcggcgt
tRNA gene sequence 
GGGGATGTAGCTCAGCTAGGCAGAGCGCCTGGCTCATAACCAGGTGGTCATCGGTTCAAA
CCCGGTCATCCCCAttt
Downstream region at tRNA end position 
gttatgcaaa
Secondary structure (Cloverleaf model)
>At2041	Met	CAT
                   t      Attt gttatgcaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          C A
                    T     T G G C C     A
      C G A        A      | + | | |     A
    T       C T C G       A T C G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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