The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2064
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 961850
End posion on genome 961924
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aagatcattt
tRNA gene sequence 
GGGGGTGTAGCTTAGCCAGGTCAGAGCGCCCGGCTCATAACCGGGCGGCCATGGGTTCGA
ATCCCTTCACCCCCAtga
Downstream region at tRNA end position 
ttacaccggc
Secondary structure (Cloverleaf model)
>At2064	Met	CAT
                   t      Atga ttacaccggc
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     T T C C C     A
    C C G A        A      |   | | |     G
  A         T T C G       A T G G G     C
  G         + | | |                 T T
  G         G A G C
    T C A          G     CGGCC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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