The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2198
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 3936
End posion on genome 4012
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggaggcctgc
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGCCGGGCTCATAACCCGGTGGTCCGGGGTTCGAA
TCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
ccccttcacg
Secondary structure (Cloverleaf model)
>At2198	Met	CAT
                   c      ACCA ccccttcacg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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